The Suite Life on Deck

London, Zack, Cody and Mr. Moseby set sail on the S.S. Tipton for their semester at sea. London convinces her roomate to leave the ship so she can have a room to herself. Cody finds himself sharing a room with Woody, who is very messy, and Zack shares a room with Bailey, who is a neat freak. Nobody knows that Bailey is a girl who disguised herself as a boy in order to gain a position on the ship after she found that there were no more vacancies for girls. Zack and Cody agree to switch roommates, but Zack changes his mind after he finds out that Bailey is a girl. After everyone else eventually finds this out Bailey is allowed to stay, filling the position vacated by London's ex-roommate, and Bailey becomes London's new roommate. This is the last straw for London and she escapes to Parrot Island via helicopter.

When the S.S. Tipton makes a special trip to pick up London from Parrot Island, Bailey, Moseby and Woody find themselves in jail because all the parrots left for Seal Island after Tipton Industries cut down all the trees. It's up to Zack and Cody to get them out of it but Zack and Cody end up in jail along with the others, and Bailey has to use her pig, Porkers, to rescue them. Zack and Cody fight for Bailey and Zack lets Cody have her after finding out about her ex-boyfriend Moose and seeing she has too much "baggage".

Bailey is mad that London is hogging all the space in their cabin, so she makes up a "Sea Snark" attack, but later feels guilty and tells her the truth. Meanwhile, when Zack uses up both his and Cody's meal cards buying things for all of the girls on the ship, they go broke. To make up for it, Moseby puts them to work. Because of that, Zack thinks that Cody should win the yo-yo contest for its $1,000 prize, but Cody finds himself up against the pro, Johan Yo.

A microchip with secret information on it goes missing and the twins help a spy recover it. Cody gives the chip to Bailey, telling her to hide it and not to look at what's in it, but Bailey looks it up on her computer anyway. When Cody finds out that Bailey ignored him, breaking her promise, he has mixed emotions. Bailey kisses Cody on the lips as a way of telling him he can trust her, so he forgives her.

London wants to become the assistant to the ship's magician after she develops a crush on him. Meanwhile, Zack wants to spend more time with Woody.

As punishment for setting off a stink cloud, Zack is made hall monitor, a role which he takes way too seriously. After sending half of the school to detention, Zack experiences the repercussions of upsetting all of his friends. Meanwhile, Bailey gets a job at London's boutique, an extension of London's personal closet.

Cody leaves the ship following his break up with Bailey to join an elite, non-religious, monk-like club which he hopes will help him get over the break up. Zack and Woody are determined to go there and save Cody. Meanwhile, London and Miss Tutweiller try to console Bailey by giving her relationship advice.

No longer a couple, Cody and Bailey must choose who keeps Buck, their pet rat. Kirby investigates both to see who will make the better owner, but Woody is bitten by Buck, creating a super-hero alter-ego "Ratman."

The Seven Seas High dance is coming up. Having broke up, Cody and Bailey lie about having dates to the dance, so they quickly try to find a backup date to backup their lie. Now the pressure is on to see who has the best game. Meanwhile, Woody is tired of Tutweiller and Moseby arguing about who should get the skydeck for the school dance, so he makes them share the skydeck. It is revealed though flashback that Mr. Moseby and Miss Tutweiler's interest in the Middle Ages and 1980s, respectively, comes from the tribulations they endured as outcasts in their youth. Through understanding, Mr. Moseby convinces Emma that they both have become successful adults and have overcome their painful pasts.